Tag Archives: outcross

Let’s Talk Linebreeding

“One of the most bandied about terms among breeders today seems to be linebreeding. Despite it’s widespread use, however, linebreeding is frequently misunderstood and miscommunicated; in fact, it is not altogether uncommon for an outcrossed pedigree to be mistakenly viewed as linebreeding by the novice. The present discussion defines linebreeding and how we can more accurately define our linebred litters.”

From – “Let’s Talk Linebreeding” written by Claudia Waller Orlandi, Ph.D. published in ‘Tally Ho’ the Basset Club of America Newsletter (July-August ’97). The online article may be found by clicking here.

(While this article was written with the Basset Hound breeder in mind, one can change the name to  Gordon Setter, or any breed for that matter, as the material is “one size fits all” when it comes to the topic of breeding.)

Linebreeding and Inbreeding: A Family Affair

Inbreeding and Linebreeding involve the mating of animals within the same family. Breeding relatives is used to cement traits, the goal being to make the offspring homozygous (pure) for desirable characteristics. Homozygous dogs tend to be prepotent and produce offspring that look like themselves (Walkowicz & Wilcox 1994)

Willis (1989) defines Inbreeding as the mating of animals “more closely related to one another than the average relationship within the breed.” Inbred pairings would include brother/sister (the closest form) father/daughter, mother/son, and half-brother/half-sister.  Linebreeding involves breeding relatives other than the individual parents or brother and sisters. Typical linebred matings are grandfather/granddaughter, grandmother/grandson, grandson/granddaughter, great-grandmother/great-grandson, uncle/niece, aunt/nephew and cousin crosses. Linebreeding is a less intense form of inbreeding. Because of their focus on a dog’s potential genetic contribution, inbreeding and line breeding are termed genetic breeding systems.

figure-1-genetic-breeding-systems Definition:  For a dog to be linebred there must be an ancestor in the pedigree that is common to both the sire and the dam.  Figure 2 illustrates this concept. Kelly is linebred because the dog, Brahms, appears twice in the sire’s side and once in the dam’s side of the pedigree.figure-2-linebreedingCommon Misconception:  A pedigree may show either the sire and/or the dam to be linebred but no ancestor common to both the sire and dam. This is outcrossing, not linebreeding (see figure 3).  Similarly, because the same kennel prefixes (Windy, Hill, Castle) are common to both the sire’s and dam’s ancestors, the newcomer may mistakenly view the pedigree as linebreeding.figure-3-outcrossingWhere to draw the “Line”?

Breeders do not always agree on what constitutes linebreeding, with some feeling that common ancestors within the first five or six generations is linebreeding. Willis (1989) indicates that the farther back linebreeding is in a pedigree the less intensive it will be, pointing out that a dog appearing 12 times (out of a possible 32) in the 6th generation of a pedigree would have a Coefficient of Inbreeding (CI) of only 1.8% (by comparison, a sire to a granddaughter cross has a CI of 12.5%). The CI tell us the proportion of genes for which the inbred ancestor is likely to be homozygous, that is carrying the same genes from each parent. (Remember that homozygous animals have a higher potential for reproducing themselves.) In Willis’s (1992) view, a common ancestor farther back than the 2nd or 3rd generation will have little influence on the litter. Linebreeding beyond the fourth generation has even less genetic impact.

How much bang will we get for our buck (or Basset!)

Several modern writers (Walkowitz & Wilcox 1994; Willis 1992, 1989; Onstott 1962) view linebreeding and inbreeding as essentially the same  and differing only in degree of intensity. Whether one considers inbreeding and linebreeding to be the same or feels they are two distinct breeding systems, quantifying the degree to which an animal is linebred (or inbred) provides important information regarding its potential genetic contribution. As Willis (1989) states: “When describing inbreeding [or linebreeding] breeders often say their dog is inbred or linebred without further qualification. This is a very inadequate description. We need to know which dog the animal is inbred [linebred] to and the degree of inbreeding [linebreeding].” Put another way, how much “bang” will we get from our linebreeding?

Describing your Basset’s linebred pedigree: reading, writing and a little arithmetic!

Willis (1992) suggests that a concise yet meaningful way to express the extent of linebreeding (inbreeding) is to number the generations of the animal in question. The common ancestor(s) is assigned the generation number as he/she appears in the pedigree. The parents are the first generation (1), the grandparents are the second (2), great grandparents are the third (3), great-great-grandparents are the fourth (4) and so on.

As previously stated, Kelly’s pedigree (Figure 2) is an example of  linebreeding, with Brahms appearing on both the sire’s and dam’s side. On the sire’s side Brahms appears twice in the third generation (3). We can write this as 3.3. On the dam’s side, Brahms appears once in the second generation (2) and this is written simply as 2. Willis has suggested the following written and verbal formats for expressing the extent of line breeding in a pedigree:

Written Format

We would write: “Kelly is linebred on Brahms 3.3/2”

Verbal Format

We would say: “Kelly is linebred on  Brahms three, three TO two.”

In the Written Format notice we separate the sire’s and dam’s side of the pedigree by using a slash mark (think of a pencil making a slash mark); in the Verbal Format the word “TO” is used to separate the sire’s and dam’s side (think of talking “to” someone). This verbal and written format tells us the dog on which Kelly is linebred and the extent of the linebreeding. Smaller numbers indicate that a dog is more closely linebred; larger numbers of 4 and above (Willis 1989) indicate a lesser extent.

Linebreeding and pedigrees: a final caveat

Linebreeding and inbreeding are essentially the same, differing only in the degree of intensity. (In Willis’s view, the common ancestors beyond the 2nd and 3rd generations will not greatly influence the resulting litter.) We have described the ease with which an animal’s extent of linebreeding may be expressed by means of written and verbal models. Perhaps this format will be “adopted” by those Basset Hound breeders whose interest lies in linebreeding. In addition to facilitating the description of a linebred pedigree over the phone, it certainly provides important information regarding the potential outcome of a breeding. In this regard, two things bear repeating: (1) linebreeding (and inbreeding) are only as viable as a breeder’s knowledge of basic genetics (a topic which will be addressed in future columns) and (2) a linebred pedigree is only as valuable as a person’s ability to determine the virtues and faults of the dogs it contains. When we add the final ingredient of rigorous selection hopefully we are on the way to producing better Basset Hounds!

References

Onstott, K. 1980. The New Art of Breeding Better Dogs. Howell, New York.

Walkowicz, C. and Wilcox, B. 1994 Successful Dog Breeding. Howell, New York.

Will, M.B. 1968 A simple method for calculating Wright’s coefficient of inbreeding. Rev. Cubana Cienc.Agric. (Eng.Ed.) 2: 171-4

Willis, M.B. 1989 Genetics of the Dog. Howell, New York

Willis, M.B. 1992. Practical Genetics for Dog Breeders. Howell, New York

For more articles about breeding by Claudia follow the link below.

These articles were written by Claudia Waller Orlandi, Ph.D. All have been published in ‘Tally Ho’, the official newsletter of the Basset Hound Club of America

Thank you to Barbara Manson, WI for sharing this link with us.

Sally Gift, Mesa AZ

Photography by Susan Roy Nelson

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Small Population Breeds and Issues of Genetic Diversity

bell-jerold-1520260577 By Jerold s Bell DVM, Clinical Associate Professor of Genetics, Tufts Cummings School of Veterinary Medicine.  Reprinted by permission of the author.

(This article was originally published in the March 2007 AKC Perspectives Delegates Newsletter.)

Issues of genetic diversity are a concern to dog breeders, and this can be especially so for breeds with small populations. The concern is whether there is enough genetic variation within a breed’s gene pool to maintain health and vitality. Breeders should be concerned about genetic diversity, because there are examples where damage has been done to a breed due to breeding practices. Restriction of genetic diversity can also occur in large population breeds.

All genes come in pairs: one from the sire and one from the dam. Each gene in the pair is called an allele. If both alleles in a pair are of the same type, the gene pair is homozygous. If the two alleles are different, the gene pair is heterozygous. While each dog can have a maximum of two different alleles at a gene pair, many different alleles are potentially available to be part of the gene pair. The greater the number of alleles that are available at each gene pair (called genetic polymorphism), the greater the genetic diversity of the breed.

If there is no breed diversity in a gene pair, but the particular homozygous gene that is present is not detrimental, there is no negative effect on breed health. The characteristics that make a breed reproduce true to its standard are, in fact, based on non-variable (that is, homozygous) gene pairs.

The origins of the breeds have a lot to do with genetic diversity. A breed established with a working phenotype tends to have diverse founder origins, and significant diversity. Even with substantial population bottlenecks, the breed can maintain considerable amounts of genetic diversity. This was shown in a molecular genetic study of the Chinook breed, which was reduced to 11 modern founders in 1981. Breeds established by inbreeding on a limited number of related founder individuals could have a reduced diversity. Many breeds have also gone through diversity reducing bottlenecks; such as occurred during World War II. For most of these breeds, their gene pools have expanded through breeding for many generations, resulting in a stable population of healthy dogs.

There are two factors that must be considered when evaluating genetic diversity and health issues in a breed; the average level of inbreeding, and detrimental recessive genes. With a small population, there is a tendency to find higher average inbreeding coefficients due to the relatedness between dogs from common ancestors. There is, however, no specific level or percentage of inbreeding that causes impaired health or vigor. The problems that inbreeding depression cause in purebred populations stem from the effects of deleterious recessive genes. If the founding population of a breed produces a high frequency of a deleterious recessive gene, then the breed will have issues with that disorder. This can be seen as smaller litter size, increased neonatal death, high frequency genetic disease, or impaired immunity. If these issues are present then the breed needs to seriously consider limited genetic diversity.

The issue of high average inbreeding coefficients is one that all breeds go through during their foundation. As the population increases and the average relatedness of dogs goes down (based on a fixed number of generations), the average inbreeding coefficient for the breed will go down. The effect of initially higher inbreeding coefficients in small population breeds will depend on the presence of deleterious recessive genes that will be expressed when homozygous.

Some breeders discourage linebreeding and promote outbreeding in an attempt to protect genetic diversity in their breed. It is not the type of matings utilized (linebreeding or outbreeding) that causes the loss of genes from a breed gene pool. Rather, loss of genes occurs through selection: the use and non-use of offspring. If a breed starts limiting their focus to breeding stock from a limited number of lines, then a loss of genetic diversity will occur.

The process of maintaining healthy lines, with many breeders crossing between lines and breeding back as they see fit, maintains diversity in the gene pool. If some breeders outbreed, and some linebreed to certain dogs that they favor while others linebreed to other dogs that they favor, then breedwide genetic diversity is maintained. It is the varied opinion of breeders as to what constitutes the ideal dog, and their selection of breeeding stock based on their opinions, that maintains breed diversity.

The most important factor for diminished genetic diversity in dog breeds is the popular sire syndrome. The overuse of a popular sire beyond a reasonable contribution through frequent breedings significantly skews the gene pool in this direction, and reduces the diversity of the gene pool. Any genes that he possesses – whether positive or negative – will increase in frequency. Through this founder’s effect, breed related genetic disease can occur. Another insidious effect of the popular sire syndrome is the loss of genetic contribution from quality, unrelated males who are not used for breeding. There is a finite number of quality bitches bred each year. If one male is used in an inordinate amount of matings, there will be fewer females left for these quality males that should be contributing to the gene pool. The popular sire syndrome is a significant factor in both populous breeds and breeds with small populations.

The best methods for ensuring the health and diversity of a breed’s gene pool are to:

  1. Avoid the popular sire syndrome.
  2. Utilize quality dogs from the breadth of your population to expand the gene pool.
  3. Monitor genetic health issues through regular health surveys.
  4. Do genetic testing for breed-related disorders.
  5. Participate in open health registries, such as CHIC (www.caninehealthinfo.org) to manage genetic disorders.

 

(This article can be reprinted with the written permission from the author: jerold.bell@tufts.edu)

Related article – Outcrossing Does Not Equal Gene Pool Diversity

Photograph courtesy of Susan Roy Nelson is not intended to illustrate any point in the article, it is presented for your viewing pleasure only.

 

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Outcrossing Does Not Equal Gene Pool Diversity

In previous articles we’ve talked about the shrinking population of the purebred dog and specifically about how much smaller the Gordon Setter population is today – over 70% fewer Gordons than twenty years ago. The current bottleneck in the number of Gordon Setters available for breeding calls for us, as responsible breeders, to evaluate each mating more carefully to determine if it will accomplish our own goals while also considering the impact our mating will have on the breed gene pool. As breeders in today’s world we are not only charged with improving the breed, we are also called upon to ensure that our breeding activity has a positive impact on the preservation of the breed gene pool.  The good news my friends, is that all of this can be less painful to accomplish than you might have thought.

For topics like this I call on experts for advice, and I am grateful to Jerold S. Bell DVM, Clinical Associate Professor of Genetics, Tufts Cummings School of Veterinary Medicine for the guidance he’s offering. Jerry’s article Small Population Breeds & Issues of Genetic Diversity is the resource used for this article and is quoted here, and reprinted entirely elsewhere on the blog with his permission. (Click the title above to link to that article.)

Has the Gordon Setter population reached a level where we should consider it a “small population breed”? Perhaps not, yet..who’s to say? The point here is that the population of the Gordon Setter has shrunk dramatically (Honey, I Shrunk the Kids!) and as it is now substantially smaller, breeders must be aware of how important our breeding choices become when viewed in terms of the health of our breed gene pool. Just as there are fewer Gordon Setters, so too are there far fewer breeders bearing the responsibility for their preservation. With fewer breeders we find that many of the older lines are harder if not impossible to find today.

Jerold S. Bell DVM –  *Issues of genetic diversity are a concern to dog breeders, and this can be especially so for breeds with small populations. The concern is whether there is enough genetic variation within a breed’s gene pool to maintain health and vitality. Breeders should be concerned about genetic diversity, because there are examples where damage has been done to a breed due to breeding practices. Restriction of genetic diversity can also occur in large population breeds.

Putting a lesson in genetics aside for another time, let’s talk today about genetic diversity in our breed gene pool.  Quoting Jerold S. Bell DVM  * There are two factors that must be considered when evaluating genetic diversity and health issues in a breed; the average level of inbreeding, and detrimental recessive genes. With a small population, there is a tendency to find higher average inbreeding coefficients due to the relatedness between dogs from common ancestors. There is, however, no specific level or percentage of inbreeding that causes impaired health or vigor. The problems that inbreeding depression cause in purebred populations stem from the effects of deleterious recessive genes. If the founding population of a breed produces a high frequency of a deleterious recessive gene, then the breed will have issues with that disorder. This can be seen as smaller litter size, increased neonatal death, high frequency genetic disease, or impaired immunity. If these issues are present then the breed needs to seriously consider limited genetic diversity. 

In this statement then, as a group of dedicated breeders, we find a key to issues or symptoms, whose frequency of expression within the breed need monitoring. An increase or spike in these symptoms throughout the breed population, that goes beyond normal expectations, should be a cue that breeders need to seriously consider if we are experiencing limited genetic diversity in our breed gene pool. As a group we must be willing to share our breeding experiences with a wide audience of our peers. Additionally, we must understand that GSCA Health and Genetics committee surveys are also a vital indicator of the breed health, especially as it pertains to breed gene pool diversity.

As we talk about gene pool diversity, we may find some breeders who discourage linebreeding and promote outcrossing (outbreeding) as the way to protect genetic diversity in the breed. While this does sound like an easy, and maybe even an obvious answer, outbreeding would not provide the complete solution.

Jerold S. Bell DVM – *It is not the type of matings utilized (linebreeding or outbreeding) that causes the loss of genes from a breed gene pool. Rather, loss of genes occurs through selection: the use and non-use of offspring. If a breed starts limiting their focus to breeding stock from a limited number of lines, then a loss of genetic diversity will occur.

The process of maintaining healthy lines, with many breeders crossing between lines and breeding back as they see fit, maintains diversity in the gene pool. If some breeders outbreed, and some linebreed to certain dogs that they favor while others linebreed to other dogs that they favor, then breedwide genetic diversity is maintained. It is the varied opinion of breeders as to what constitutes the ideal dog, and their selection of breeeding stock based on their opinions, that maintains breed diversity.

The most important factor for diminished genetic diversity in dog breeds is the popular sire syndrome. The overuse of a popular sire beyond a reasonable contribution through frequent breedings significantly skews the gene pool in this direction, and reduces the diversity of the gene pool. Any genes that he possesses – whether positive or negative – will increase in frequency. Through this founder’s effect, breed related genetic disease can occur. Another insidious effect of the popular sire syndrome is the loss of genetic contribution from quality, unrelated males who are not used for breeding. There is a finite number of quality bitches bred each year. If one male is used in an inordinate amount of matings, there will be fewer females left for these quality males that should be contributing to the gene pool. The popular sire syndrome is a significant factor in both populous breeds and breeds with small populations.

I believe as a whole, that Gordon Setter stud dog owners have worked hard to manage stud dogs properly to avoid the “popular sire syndrome”. This is not an easy task to manage as so many variables, including emotions come into play. Hats off to all who have kept a diligent and watchful eye on our breed through proper stud dog management.

As I look back at what Dr. Bell has written, I realize that our breed is fortunate to have had many breeders, both past and present, who have contributed much to preserve the Gordon Setter; sometimes they contributed matings that improved specific aspects of the breed and sometimes they contributed by using breeding practices that preserved genetic diversity. Moving forward, our breed needs us to continue to attract and mentor a diverse group of breeders who also possess an understanding of the principles of gene pool diversity. As we have seen, there is simply not one step or one action to preserve diversity, instead there is a collection of various actions, that when understood and followed by the individual breeder, with each breeder working alongside the many other breeders – it is when we work as a collective group that we accomplish that one common goal – preservation of the purebred Gordon Setter…oh, and don’t forget there is still improvement of the breed to consider!

Jerold S. Bell DVM writes:  *The best methods for ensuring the health and diversity of a breed’s gene pool are to:

  1. Avoid the popular sire syndrome.
  2. Utilize quality dogs from the breadth of your population to expand the gene pool. (as new genes cannot be added to a closed registry this refers to preserving genes that might otherwise be lost by selection of only a few sires out of the many available)
  3. Monitor genetic health issues through regular health surveys.
  4. Do genetic testing for breed-related disorders.
  5. Participate in open health registries, such as CHIC (www.caninehealthinfo.org) to manage genetic disorders.

Small Population Breeds & Issues of Genetic Diversity by Jerold S. Bell DVM

Photograph by Susan Roy Nelson shared for your viewing pleasure, is not intended to illustrate any point in the article.

 

 

 

 

Why all the fuss about inbreeding?

I’m sharing another great article from the Institute of Canine Biology with you today on breeding and genetics written by Carol Beuchat PhD.  This blog and Carol’s writings offer a wealth of information for the serious dog breeder and I’m going to be

Photo by Laurie Ward
Photo by Laurie Ward

recommending quite a bit of reading from this site for just that reason.

In this article Carol covers the topic of genetic disorders and the choices breeders face when planning a mating. She says “Breeders know that they can use inbreeding to concentrate the genes for the traits they prefer and to increase the predictability of a breeding by reducing variation in the offspring. But breeders have no way to increase the good genes but not the bad ones through inbreeding. (There are ways this can be done, but not using inbreeding.)”

As breeders we simply must take time to learn and understand genetics.  “You will hear people say that their lines are “healthy”, or that a particular problem is “not in my lines” This is a quote from Carol’s blog that I’ve heard oh, so very often, from many, many breeders over the years. Before you assume that you are safe to use statements like this as fact, read this article. It will indeed help you to more fully understand what lies beneath the surface.

Click the link that follows to be whisked away to the land of Genetics! Why all the fuss about inbreeding? (Or “Why are there so many genetic disorders in dogs?”) 

Sally Gift, Mesa AZ

Photo by Laurie Ward
Photo by Laurie Ward

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